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1

FreePub: Collecting and Organizing Scienti*c Material Using Mindmaps

Dalamagas, Theodore, Farmakakis, Tryfon, Maragkakis, Manolis, Hatzigeorgiou, Artemis Hatzigeorgiou

Journal:

Bioentrepreneur

Year:

2010

Language:

english

File:

PDF, 1.75 MB

english, 2010

2

Online resources for microRNA analysis

Alexiou, Panagiotis, Maragkakis, Manolis, Hatzigeorgiou, Artemis G

Journal:

Journal of Nucleic Acids Investigation

Year:

2011

File:

PDF, 408 KB

2011

3

Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction

Bernal, Axel, Crammer, Koby, Hatzigeorgiou, Artemis, Pereira, Fernando

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 717 KB

english, 2007

4

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia

Camps, Carme, Saini, Harpreet K, Mole, David R, Choudhry, Hani, Reczko, Martin, Guerra-Assunção, José, Tian, Ya-Min, Buffa, Francesca M, Harris, Adrian L, Hatzigeorgiou, Artemis G, Enright, Anton J, R

Journal:

Molecular Cancer

Year:

2014

Language:

english

File:

PDF, 1020 KB

english, 2014

5

Neuronal ELAVL proteins utilize AUF-1 as a co-partner to induce neuron-specific alternative splicing of APP

Fragkouli, Apostolia, Koukouraki, Pelagia, Vlachos, Ioannis S., Paraskevopoulou, Maria D., Hatzigeorgiou, Artemis G., Doxakis, Epaminondas

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.41 MB

english, 2017

6

Computational classification of microRNAs in next-generation sequencing data

Joshua Riback, Artemis G. Hatzigeorgiou, Martin Reczko

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2010

Language:

english

File:

PDF, 341 KB

english, 2010

7

Impact of Helicobacter pylori Infection and Its Major Virulence Factor CagA on DNA Damage Repair

Kontizas, Eleftherios, Tastsoglou, Spyros, Karamitros, Timokratis, Karayiannis, Yiannis, Kollia, Panagoula, Hatzigeorgiou, Artemis G., Sgouras, Dionyssios N.

Journal:

Year:

2020

File:

PDF, 1.80 MB

2020

8

Human microRNA-155 on Chromosome 21 Differentially Interacts with Its Polymorphic Target in the AGTR1 3′ Untranslated Region: A Mechanism for Functional Single-Nucleotide Polymorphisms Related to Phenotypes

Praveen Sethupathy, Christelle Borel, Maryline Gagnebin, Gregory R. Grant, Samuel Deutsch, Terry S. Elton, Artemis G. Hatzigeorgiou, Stylianos E. Antonarakis

Journal:

The American Journal of Human Genetics

Year:

2007

Language:

english

File:

PDF, 452 KB

english, 2007

9

Use of Mutagenesis, Genetic Mapping and Next Generation Transcriptomics to Investigate Insecticide Resistance Mechanisms

Kalajdzic, Predrag, Oehler, Stefan, Reczko, Martin, Pavlidi, Nena, Vontas, John, Hatzigeorgiou, Artemis G., Savakis, Charalambos, Callaerts, Patrick

Journal:

Year:

2012

Language:

english

File:

PDF, 225 KB

english, 2012

10

[ACM Press the 26th International Conference - Aalborg, Denmark (2014.06.30-2014.07.02)] Proceedings of the 26th International Conference on Scientific and Statistical Database Management - SSDBM '14 - MR-microT

Kanellos, Ilias, Vergoulis, Thanasis, Sacharidis, Dimitris, Dalamagas, Theodore, Hatzigeorgiou, Artemis, Sartzetakis, Stelios, Sellis, Timos

Year:

2014

Language:

english

File:

PDF, 328 KB

english, 2014

11

miRNA genetic alterations in human cancers

Giannakakis, Antonis, Coukos, George, Hatzigeorgiou, Artemis, Sandaltzopoulos, Raphael, Zhang, Lin

Journal:

Expert Opinion on Biological Therapy

Year:

2007

Language:

english

File:

PDF, 192 KB

english, 2007

12

The DIANA-mirExTra Web Server: From Gene Expression Data to MicroRNA Function

Alexiou, Panagiotis, Maragkakis, Manolis, Papadopoulos, Giorgio L., Simmosis, Victor A., Zhang, Lin, Hatzigeorgiou, Artemis G., Ben-Jacob, Eshel

Journal:

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

13

DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts

Karagkouni, Dimitra, Paraskevopoulou, Maria D, Tastsoglou, Spyros, Skoufos, Giorgos, Karavangeli, Anna, Pierros, Vasilis, Zacharopoulou, Elissavet, Hatzigeorgiou, Artemis G

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 3.00 MB

english, 2019

14

Transcriptome Analysis Identifies Immune Markers Related to Visceral Leishmaniasis Establishment in the Experimental Model of BALB/c Mice

Agallou, Maria, Athanasiou, Evita, Kammona, Olga, Tastsoglou, Spyros, Hatzigeorgiou, Artemis G., Kiparissides, Costas, Karagouni, Evdokia

Journal:

Frontiers in Immunology

Year:

2019

File:

PDF, 4.59 MB

2019

15

Online resources for miRNA analysis

Vlachos, Ioannis S., Hatzigeorgiou, Artemis G.

Journal:

Clinical Biochemistry

Year:

2013

Language:

english

File:

PDF, 5.66 MB

english, 2013

16

A guide through present computational approaches for the identification of mammalian microRNA targets

Sethupathy, Praveen, Megraw, Molly, Hatzigeorgiou, Artemis G

Journal:

Year:

2006

Language:

english

File:

PDF, 203 KB

english, 2006

17

Characterization of a spliced exon product of herpes simplex type-1 latency-associated transcript in productively infected cells

Wen Kang, Ruma Mukerjee, Jared J. Gartner, Artemis G. Hatzigeorgiou, Rozanne M. Sandri-Goldin, Nigel W. Fraser

Journal:

Year:

2006

Language:

english

File:

PDF, 400 KB

english, 2006

18

ECCB 2018: The 17th European Conference on Computational Biology

Hatzigeorgiou, Artemis G, Bagos, Pantelis, Benos, Panayiotis V, Nikolaou, Christoforos, Moreau, Yves, Kavakiotis, Ioannis

Journal:

Year:

2018

Language:

english

File:

PDF, 119 KB

english, 2018

19

FreePub: Collecting and Organizing Scienti*c Material Using Mindmaps

Dalamagas, Theodore, Farmakakis, Tryfon, Maragkakis, Manolis, Hatzigeorgiou, Artemis Hatzigeorgiou

Journal:

Bioentrepreneur

Year:

2010

File:

PDF, 1.75 MB

2010

20

Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations

Ragan, Chikako, Zuker, Michael, Ragan, Mark A., Hatzigeorgiou, Artemis G.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 795 KB

english, 2011

21

Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data

Reczko, Martin, Maragkakis, Manolis, Alexiou, Panagiotis, Papadopoulos, Giorgio L., Hatzigeorgiou, Artemis G.

Journal:

Frontiers in Genetics

Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

22

Online resources for microRNA analysis

Alexiou, Panagiotis, Maragkakis, Manolis, Hatzigeorgiou, Artemis G

Journal:

Journal of Nucleic Acids Investigation

Year:

2011

Language:

english

File:

PDF, 194 KB

english, 2011

23

Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data

Georgakilas, Georgios K., Perdikopanis, Nikos, Hatzigeorgiou, Artemis

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.77 MB

2020

24

microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs

Georgakilas, Georgios, Vlachos, Ioannis S., Paraskevopoulou, Maria D., Yang, Peter, Zhang, Yuhong, Economides, Aris N., Hatzigeorgiou, Artemis G.

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.30 MB

english, 2014

25

[ACM Press the 27th International Conference - La Jolla, California (2015.06.29-2015.07.01)] Proceedings of the 27th International Conference on Scientific and Statistical Database Management - SSDBM '15 - TarMiner

Tsoupidi, Rodothea-Myrsini, Kanellos, Ilias, Vergoulis, Thanasis, Vlachos, Ioannis S., Hatzigeorgiou, Artemis G., Dalamagas, Theodore

Year:

2015

Language:

english

File:

PDF, 261 KB

english, 2015

26

Same computational analysis, different miRNA target predictions

Hatzigeorgiou, Artemis G

Journal:

Year:

2007

Language:

english

File:

PDF, 94 KB

english, 2007

27

Isoform specific gene auto-regulation via miRNAs: a case study on miR-128b and ARPP-21

Molly Megraw, Praveen Sethupathy, Kiranmai Gumireddy, Shane T. Jensen, Qihong Huang, Artemis G. Hatzigeorgiou

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2010

Language:

english

File:

PDF, 235 KB

english, 2010

28

DIANA-miRPath v3.0: deciphering microRNA function with experimental support

Vlachos, Ioannis S., Zagganas, Konstantinos, Paraskevopoulou, Maria D., Georgakilas, Georgios, Karagkouni, Dimitra, Vergoulis, Thanasis, Dalamagas, Theodore, Hatzigeorgiou, Artemis G.

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 4.02 MB

english, 2015

29

A Positive Regulatory Loop between a Wnt-Regulated Non-coding RNA and ASCL2 Controls Intestinal Stem Cell Fate

Giakountis, Antonis, Moulos, Panagiotis, Zarkou, Vasiliki, Oikonomou, Christina, Harokopos, Vaggelis, Hatzigeorgiou, Artemis G., Reczko, Martin, Hatzis, Pantelis

Journal:

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

30

microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions

Paraskevopoulou, Maria D., Karagkouni, Dimitra, Vlachos, Ioannis S., Tastsoglou, Spyros, Hatzigeorgiou, Artemis G.

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.06 MB

english, 2018

31

Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data

Handzlik, Joanna E., Tastsoglou, Spyros, Vlachos, Ioannis S., Hatzigeorgiou, Artemis G.

Journal:

Scientific Reports

Year:

2020

File:

PDF, 1.98 MB

2020

32

A Poly(Lactic-co-Glycolic) Acid Nanovaccine Based on Chimeric Peptides from Different Leishmania infantum Proteins Induces Dendritic Cells Maturation and Promotes Peptide-Specific IFNγ-Producing CD8+ T Cells Essential for the Protection against Experimental Visceral Leishmaniasis

Athanasiou, Evita, Agallou, Maria, Tastsoglou, Spyros, Kammona, Olga, Hatzigeorgiou, Artemis, Kiparissides, Costas, Karagouni, Evdokia

Journal:

Frontiers in Immunology

Year:

2017

Language:

english

File:

PDF, 5.13 MB

english, 2017

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